dynamo.pl.basic_stats
- dynamo.pl.basic_stats(adata, group=None, figsize=(4, 3), save_show_or_return='show', save_kwargs={})[source]
Plot the basic statics (nGenes, nCounts and pMito) of each category of adata.
- Parameters:
adata (
AnnData
) – an AnnData object.group (
Optional
[str
]) – the column key of adata.obs to facet the data into subplots. If None, no faceting will be used. Defaults to None.figsize (
Tuple
[float
,float
]) – the size of each panel in the figure. Defaults to (4, 3).save_show_or_return (
Literal
['save'
,'show'
,'return'
]) – whether to save, show, or return the plots. Could be one of ‘save’, ‘show’, or ‘return’. Defaults to “show”.save_kwargs (
Dict
[str
,Any
]) – a dictionary that will be passed to the save_show_ret function. By default, it is an empty dictionary and the save_show_ret function will use the {“path”: None, “prefix”: ‘basic_stats’, “dpi”: None, “ext”: ‘pdf’, “transparent”: True, “close”: True, “verbose”: True} as its parameters. Otherwise, you can provide a dictionary that properly modify those keys according to your needs. Defaults to {}.
- Return type:
- Returns:
None would be returned by default. If save_show_or_return is set to ‘return’, the generated figure (seaborn.FacetGrid) would be returned.