dynamo.pl.cell_cycle_scores

dynamo.pl.cell_cycle_scores(adata, cells=None, save_show_or_return='show', save_kwargs={})

Plot a heatmap of cells ordered by cell cycle position

Parameters:

• adata (AnnData) –

• cells (a list of cell ids used to subset the adata object.) –

• save_show_or_return (str) – Whether to save, show or return the figure.

• save_kwargs (dict) –

  A dictionary that will passed to the save_fig function. By default it is an empty dictionary and the save_fig function will use the {“path”: None, “prefix”: ‘scatter’, “dpi”: None, “ext”: ‘pdf’, “transparent”:

  True, “close”: True, “verbose”: True} as its parameters. Otherwise you can provide a dictionary that properly modify those keys according to your needs.

Return type:

Optional[Axes]