dynamo.pl.tsne

dynamo.pl.tsne(adata, *args, **kwargs)[source]

Scatter plot with tsne basis.

Parameters:: adata (AnnData) – an Annodata object.
Return type:: Nothing but plots the tsne embedding of the adata object.

Examples

>>> import dynamo as dyn
>>> adata = dyn.sample_data.hgForebrainGlutamatergic()
>>> dyn.pp.recipe_monocle(adata)
>>> dyn.tl.dynamics(adata)
>>> dyn.pl.tsne(
...     adata,
...     color='ntr'
... )