Introduction
Contents
generalized_diffusion_map()
Conventional scRNA-seq
Labeling scRNA-seq
Differential geometry
Vector field predictions
Gallery
Apply the diffusion map algorithm on the transition matrix build from Itô kernel.
adata (AnnData) – AnnData object that contains the constructed transition matrix.
AnnData
kwargs – Additional parameters that will be passed to the diffusion_map_embedding function.
AnnData object that updated with X_diffusion_map embedding in obsm attribute.