dynamo.pp.Preprocessor
======================

.. currentmodule:: dynamo.pp

.. add toctree option to make autodoc generate the pages

.. autoclass:: Preprocessor







Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~dynamo.pp.Preprocessor.add_experiment_info
    ~dynamo.pp.Preprocessor.config_monocle_pearson_residuals_recipe
    ~dynamo.pp.Preprocessor.config_monocle_recipe
    ~dynamo.pp.Preprocessor.config_pearson_residuals_recipe
    ~dynamo.pp.Preprocessor.config_sctransform_recipe
    ~dynamo.pp.Preprocessor.config_seurat_recipe
    ~dynamo.pp.Preprocessor.preprocess_adata
    ~dynamo.pp.Preprocessor.preprocess_adata_monocle
    ~dynamo.pp.Preprocessor.preprocess_adata_monocle_pearson_residuals
    ~dynamo.pp.Preprocessor.preprocess_adata_pearson_residuals
    ~dynamo.pp.Preprocessor.preprocess_adata_sctransform
    ~dynamo.pp.Preprocessor.preprocess_adata_seurat
    ~dynamo.pp.Preprocessor.preprocess_adata_seurat_wo_pca
    ~dynamo.pp.Preprocessor.standardize_adata









Methods
~~~~~~~



.. automethod:: Preprocessor.add_experiment_info

.. automethod:: Preprocessor.config_monocle_pearson_residuals_recipe

.. automethod:: Preprocessor.config_monocle_recipe

.. automethod:: Preprocessor.config_pearson_residuals_recipe

.. automethod:: Preprocessor.config_sctransform_recipe

.. automethod:: Preprocessor.config_seurat_recipe

.. automethod:: Preprocessor.preprocess_adata

.. automethod:: Preprocessor.preprocess_adata_monocle

.. automethod:: Preprocessor.preprocess_adata_monocle_pearson_residuals

.. automethod:: Preprocessor.preprocess_adata_pearson_residuals

.. automethod:: Preprocessor.preprocess_adata_sctransform

.. automethod:: Preprocessor.preprocess_adata_seurat

.. automethod:: Preprocessor.preprocess_adata_seurat_wo_pca

.. automethod:: Preprocessor.standardize_adata