dynamo.pl.streamline_clusters

dynamo.pl.streamline_clusters(adata, basis='umap', clusters='clusters', color_key_cmap='Spectral', *args, **kwargs)[source]

Scatter plot for visualizing streamline clusters in selected basis.

Parameters:
  • adata (AnnData) – an Annodata object.

  • basis (str) – the reduced dimension stored in adata.uns. The specific basis key will be constructed as “streamline_clusters_”+basis. Defaults to “umap”.

  • clusters – the key of cluster data stored in the basis data. Defaults to “clusters”.

  • color_key_cmap (str) – name of the pyplot color map used for plotting. Defaults to “Spectral”.

  • *args – not used. Left here for backward compatibility.

  • **kwargs – not used. Left here for backward compatibility.

Return type:

None