dynamo.pp.scale
- dynamo.pp.scale(adata, layers=None, scale_to_layer=None, scale_to=10000.0)[source]
Scale layers to a particular total expression value, similar to normalize_expr_data function.
- Parameters:
adata (
AnnData
) – an AnnData object.layers (
Union
[List
[str
],str
,None
]) – the layers to scale. Defaults to None.scale_to_layer (
Optional
[str
]) – use which layer to calculate a global scale factor. If None, calculate each layer’s own scale factor and scale all layers to same total value. Defaults to None.scale_to (
float
) – the total expression value that layers are scaled to. Defaults to 1e6.
- Return type:
- Returns:
The scaled AnnData object.