Introduction
Contents
generalized_diffusion_map()
Preprocessing
Conventional scRNA-seq
Labeling scRNA-seq
Differential geometry
Vector field predictions
Gallery
Apply the diffusion map algorithm on the transition matrix build from Itô kernel.
Update the AnnData object with X_diffusion_map embedded in .obsm attribute.
adata (AnnData) – An AnnData object with the constructed transition matrix.
AnnData
kwargs – Additional kwargs that will be passed to diffusion_map_embedding function.
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