dynamo.tl.run_scvelo

dynamo.tl.run_scvelo(adata)[source]

Run Scvelo over the AnnData.

  1. Set up PCA, UMAP, etc.

  2. Estimate gamma and all other parameters

  3. Return results (adata.var[‘velocity_gamma’])

Parameters:

adata (AnnData) – an AnnData object.

Raises:

ImportError – scvelo not installed.

Return type:

AnnData

Returns:

The updated AnnData object.