dynamo.tl.run_scvelo
- dynamo.tl.run_scvelo(adata)[source]
Run Scvelo over the AnnData.
Set up PCA, UMAP, etc.
Estimate gamma and all other parameters
Return results (adata.var[‘velocity_gamma’])
- Parameters:
adata (
AnnData
) – an AnnData object.- Raises:
ImportError – scvelo not installed.
- Return type:
- Returns:
The updated AnnData object.