dynamo.pl.umap¶

dynamo.pl.umap(adata, *args, **kwargs)[source]¶

Scatter plot with umap basis.

Parameters: adata (AnnData) – an Annodata object.
Returns
Return type: Nothing but plots the umap embedding of the adata object.

Examples

>>> import dynamo as dyn
>>> adata = dyn.sample_data.hgForebrainGlutamatergic()
>>> adata = dyn.pp.recipe_monocle(adata)
>>> dyn.tl.dynamics(adata)
>>> dyn.pl.umap(
...     adata,
...     color='ntr'
... )