dynamo.sim.Simulator

dynamo.sim.Simulator(motif='neurogenesis', clip=True)[source]

Simulate the gene expression dynamics via deterministic ODE model

Parameters

  • motif (str (default: neurogenesis)) – Name of the network motif that will be used in the simulation.

  • clip (bool (default: True)) – Whether to clip data points that are negative.

Returns

adata – an Annodata object containing the simulated data.

Return type

AnnData