Qi Qiu, Peng Hu, et al. (2019), Massively parallel, time-resolved single-cell RNA sequencing with scNT-Seq, Biorxiv.
Xiaojie Qiu et al. (2019), Mapping vector field of single cells, Biorxiv.
Xiaojie Qiu et al. (2019), Inferring Causal Gene Regulatory Networks from Coupled Single-Cell Expression Dynamics Using Scribes, Cell systems.
Xiaojie Qiu et al. (2017), Reversed graph embedding resolves complex single-cell trajectories, Nature methods.
Cole Trapnell et al. (2014), The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells, Nature Biotechnology.
Volker Bergen et al. (2020), Generalizing RNA velocity to transient cell states through dynamical modeling, Nature biotechnology.
Páll Melsted et al. (2019), Modular and efficient pre-processing of single-cell RNA-seq, Biorxiv.
Gennady Gorin et al. (2019), RNA velocity and protein acceleration from single-cell multiomics experiments, Genome biology.
La Manno et al. (2018), RNA velocity of single cells, Nature.
Wolf et al. (2018), Scanpy: large-scale single-cell gene expression data analysis, Genome Biology.