dynamo.pl.pca

dynamo.pl.pca(adata, *args, **kwargs)

Scatter plot with pca basis.

Parameters

adata (AnnData) – an Annodata object.

Returns

Return type

Nothing but plots the pca embedding of the adata object.

Examples

>>> import dynamo as dyn
>>> adata = dyn.sample_data.hgForebrainGlutamatergic()
>>> adata = dyn.pp.recipe_monocle(adata)
>>> dyn.tl.dynamics(adata)
>>> dyn.pl.pca(
...     adata,
...     color='ntr'
... )