dynamo.sim.Simulator¶
-
dynamo.sim.
Simulator
(motif='neurogenesis', clip=True)[source]¶ Simulate the gene expression dynamics via deterministic ODE model
- Parameters
motif (str (default: neurogenesis)) – Name of the network motif that will be used in the simulation.
clip (bool (default: True)) – Whether to clip data points that are negative.
- Returns
adata – an Annodata object containing the simulated data.
- Return type
AnnData