dynamo.tl.generalized_diffusion_map

dynamo.tl.generalized_diffusion_map(adata, **kwargs)

Apply the diffusion map algorithm on the transition matrix build from Itô kernel.

Parameters

• adata (AnnData) – AnnData object that contains the constructed transition matrix.

• kwargs – Additional parameters that will be passed to the diffusion_map_embedding function.

Returns

adata – AnnData object that updated with X_diffusion_map embedding in obsm attribute.

Return type

AnnData