dynamo.vf.rank_acceleration_genes

dynamo.vf.rank_acceleration_genes(adata, group=None, genes=None, akey='acceleration')[source]

Rank gene’s absolute, positive, negative acceleration by different cell groups.

Parameters

  • adata (AnnData) – AnnData object that contains the reconstructed vector field function in the uns attribute.

  • group (str or None (default: None)) – The cell group that speed ranking will be grouped-by.

  • genes (None or list) – The gene list that speed will be ranked. If provided, they must overlap the dynamics genes.

  • akey (str (default: acceleration)) – The acceleration key.

Returns

adata – AnnData object that is updated with the rank_acceleration information in the .uns.

Return type

AnnData