Documentation#

Dynamo: Mapping Vector Field of Single Cells#

Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction, potential landscape mapping, differential geometry analyses, and most probably paths / in silico perturbation predictions.

dyname-abstract

If you find dynamo to be useful for your research, please consider citing the dynamo manuscript

Installation

New to dynamo? Check out the installation guide.

User guide

The user guide provides distilled mathematical descriptions of the models implemented in dynamo and connects the math with the code.

API reference

The API reference contains a detailed description of the dynamo API.

Tutorials

The tutorials walk you through real-world applications of dynamo.

Discussion

Need help? Reach out on our forum to get your questions answered!

GitHub

Find a bug? Interested in improving dynamo? Checkout our GitHub for the latest developments.