dynamo.pd.rank_perturbation_genes
- dynamo.pd.rank_perturbation_genes(adata, pkey='j_delta_x_perturbation', prefix_store='rank', **kwargs)[source]
Rank genes based on their raw and absolute perturbation effects for each cell group.
- Parameters
adata (
AnnData) – AnnData object that contains the gene-wise perturbation effect vectors.pkey (str (default: 'perturbation_vector')) – The perturbation key.
prefix_store (str (default: 'rank')) – The prefix added to the key for storing the returned ranking information in adata.
kwargs – Keyword arguments passed to vf.rank_genes.
- Returns
adata – AnnData object which has the rank dictionary for perturbation effects in .uns.
- Return type