- dynamo.vf.Wang_LAP(F, n_points, point_start, point_end, D=0.1, lambda_=1)[source]
Calculating least action path based methods from Jin Wang and colleagues (http://www.pnas.org/cgi/doi/10.1073/pnas.1017017108)
Callable) – The reconstructed vector field function
int) – The number of points along the least action path.
ndarray) – The matrix for storing the coordinates (gene expression configuration) of the start point (initial cell state).
ndarray) – The matrix for storing the coordinates (gene expression configuration) of the end point (terminal cell state).
float) – The diffusion constant. Note that this can be a space-dependent matrix.
lamada – Regularization parameter
- Return type:
The least action path and the action way of the inferred path.