dynamo.vf.assign_fixedpoints
- dynamo.vf.assign_fixedpoints(adata, basis='pca', cores=1, copy=False)[source]
Assign each cell in our data to a fixed point.
- Parameters:
adata (
AnnData) – AnnData object that contains reconstructed vector field in the basis space.basis (
str) – The vector field function for the basis that will be used to assign fixed points for each cell.cores (
int) – Number of cores to run the fixed-point search for each cell.copy (
bool) – Whether to return a new deep copy of adata instead of updating adata object passed in arguments and returning None.
- Returns:
Union[None, anndata.AnnData]If copy is set to False, return None but the adata object will updated with a fps_assignment in .obs as well as the ‘fps_assignment_’ + basis in the .uns. If copy is set to True, a deep copy of the original adata object is returned.
- Return type:
adata