All modules for which code is available
- anndata._io.h5ad
- anndata._io.read
- dynamo.configuration
- dynamo.data_io
- dynamo.external.gseapy
- dynamo.external.hodge
- dynamo.external.pearson_residual_recipe
- dynamo.external.scifate
- dynamo.external.scribe
- dynamo.external.sctransform
- dynamo.get_version
- dynamo.movie.fate
- dynamo.plot.cell_cycle
- dynamo.plot.clustering
- dynamo.plot.connectivity
- dynamo.plot.dimension_reduction
- dynamo.plot.dynamics
- dynamo.plot.fate
- dynamo.plot.heatmaps
- dynamo.plot.least_action_path
- dynamo.plot.markers
- dynamo.plot.networks
- dynamo.plot.preprocess
- dynamo.plot.scPotential
- dynamo.plot.scVectorField
- dynamo.plot.scatters
- dynamo.plot.space
- dynamo.plot.state_graph
- dynamo.plot.streamtube
- dynamo.plot.time_series
- dynamo.plot.topography
- dynamo.plot.utils
- dynamo.plot.vector_calculus
- dynamo.prediction.fate
- dynamo.prediction.least_action_path
- dynamo.prediction.perturbation
- dynamo.prediction.state_graph
- dynamo.prediction.trajectory
- dynamo.preprocessing.Preprocessor
- dynamo.preprocessing.cell_cycle
- dynamo.preprocessing.preprocess
- dynamo.preprocessing.utils
- dynamo.simulation.Gillespie
- dynamo.simulation.ODE
- dynamo.simulation.evaluation
- dynamo.tools.DDRTree_py
- dynamo.tools.cell_velocities
- dynamo.tools.clustering
- dynamo.tools.connectivity
- dynamo.tools.dimension_reduction
- dynamo.tools.dynamics
- dynamo.tools.growth
- dynamo.tools.markers
- dynamo.tools.metric_velocity
- dynamo.tools.moments
- dynamo.tools.psl_py
- dynamo.tools.recipes
- dynamo.tools.velocyto_scvelo
- dynamo.vectorfield.Ao
- dynamo.vectorfield.Bhattacharya
- dynamo.vectorfield.FixedPoints
- dynamo.vectorfield.Wang
- dynamo.vectorfield.cell_vectors
- dynamo.vectorfield.clustering
- dynamo.vectorfield.scPotential
- dynamo.vectorfield.scVectorField
- dynamo.vectorfield.stochastic_process
- dynamo.vectorfield.topography
- dynamo.vectorfield.vector_calculus
- dynamo.vectorfield.vfGraph_deprecated